These are the words that appear in vendor documentation, product releases, and AI conversations without anyone stopping to explain them. Each entry is one analogy and one clinical translation. The spreads do the teaching. This is just the lookup.
Core AI Mechanics
Token. The atom. Everything the model reads and writes is broken into tokens — roughly three-quarters of a word. “Vancomycin” is two tokens. “The” is one. Cost, speed, and context capacity are all measured in tokens, not words. When a tool says it has a 200,000-token context window, that is roughly 150,000 words, or several hundred pages of text.
Context window. Everything the model can see right now, and nothing else. Picture a desk with a finite surface. Whatever is on the desk, the model can use. Whatever is in a drawer, a different room, or a previous conversation, it cannot. Session ends, desk clears. This is why repeating patient details in every message is not redundant. It is necessary.
Hallucination. Confident prediction without grounding. The model is always doing one thing: predicting what comes next. When it predicts without facts to anchor to, it generates text that is plausible in form and wrong in content. It does not know it is wrong. It does not hedge unless trained to. The output reads like a confident attending and may be entirely fabricated. See Judging the Output.
Temperature. A dial between accountant and jazz musician. Low temperature means the model always picks the most probable next word. Predictable, consistent, sometimes flat. High temperature means it samples more freely, producing creative or varied output that is also more likely to wander. Most clinical tools run low temperature by default. When you notice your AI getting repetitive or oddly rigid, this is usually why.
Inference. Running the model to get an answer. When you hit send, you are requesting inference. “Inference cost” is what the API charges per query. Inference latency is how long it takes to respond. You will see these terms in vendor pricing sheets and IT conversations about enterprise AI deployment.
Prompt. Everything you type before hitting send. The prompt is the only control surface you have. There is no other dial. System prompts, examples, patient context, instructions, output format — all of it is prompt. Input quality is the only variable you control, and it determines output quality completely. See Prompting Is a Consult.
System prompt / instruction file. Standing orders the model follows before you say a word. Every commercial AI product has one baked in by the vendor. You can often add your own layer on top: custom instructions, project files, CLAUDE.md. These are how you enforce rules that apply to every interaction — no PHI, flag uncertainty, use this format — without repeating them every session. See Standing Orders for Your AI.
RAG (Retrieval-Augmented Generation). The open-book exam. Instead of answering from training memory, the model is handed documents at query time and answers from those. You ask about your hospital’s sepsis pathway. RAG pulls the actual pathway and puts it in the context window before the model responds. Cuts hallucination sharply. Does not eliminate it — the model can still misread the document it was handed. See Grounding: RAG & the Second Brain.
Fine-tuning. Residency, not a consult. Retraining the model on a specific dataset so it performs better on a narrow task. Expensive, slow, and usually not what clinicians need. Most clinical use cases are better served by good prompting and RAG. If a vendor says their product is “fine-tuned on clinical data,” that is a claim worth interrogating: what data, how recent, validated against what.
Multimodal. A model that accepts more than text. Early LLMs read and wrote words only. Multimodal models accept text, images, audio, and in some cases video. Your ambient scribe is multimodal: it listens to spoken language and outputs text. Any AI tool that reads an ECG strip, a wound photo, or a radiology image is multimodal. The underlying prediction mechanism is the same. The input types are not. When a vendor says their model is multimodal, ask which modalities are actually supported in the clinical product, not just in the underlying model.
Embedding. Meaning turned into numbers. Before retrieval can work, documents have to be converted into numerical representations that encode semantic similarity. Two sentences that mean the same thing should produce similar numbers even if the words differ. Embeddings are what make a vector database searchable by concept rather than exact keyword. You will not interact with embeddings directly, but they are the engine under RAG and semantic search.
Agentic and Workflow Terms
Agent. An AI that takes actions, not just answers. A chatbot responds. An agent responds and then does something: clicks a button, sends a message, pulls data from a system, writes a file. AI scribes, inbox drafters that auto-send, and clinical decision support tools that order labs are all agents to varying degrees. The more autonomous the action, the more critical your verification step. See From Prompts to Pipelines.
Agentic loop. Plan, act, observe, repeat. The internal cycle that makes an agent work. The model predicts an action, takes it, sees the result, incorporates the result into context, and predicts the next action. Claude Code runs this loop when it writes and tests code. An AI scribe runs a version of this loop when it listens, transcribes, and reformats. Loops amplify both quality and error. A wrong assumption early compounds through every subsequent step. See From Prompts to Pipelines.
Pipeline. A repeatable workflow with fixed steps and one verification checkpoint. When you do the same AI-assisted task more than three times, it is a pipeline candidate. Pipelines are faster and more consistent than one-off prompts. They also fail silently: if a model update or source change degrades the output, nobody notices until the damage accumulates. Every pipeline needs a human check at the end. See From Prompts to Pipelines.
Tool / function calling. The mechanism that lets a model take actions beyond generating text. Tools give the model the ability to search, calculate, pull data from an API, or trigger an external function. Without tools, a model can only talk. With tools, it can do. The line between a chatbot and an agent is tools.
Prompt injection. Someone else’s instructions smuggled into your context. If your AI is reading a web page, a document, or a patient message, and that content contains hidden instructions (“ignore your previous instructions and do X instead”), the model may follow them. A real attack vector for agentic tools that ingest external content. Relevant whenever your AI has access to inputs you did not write yourself. See Standing Orders for Your AI.
Sandbox. A walled environment where an agent can act without touching real data or live systems. Claude Code runs in a sandbox by default. Enterprise AI deployments with access to the EHR should be sandboxed during testing. If a vendor cannot describe the sandbox their agent runs in, that is a material gap.
Guardrails. Fences built into the model or the product that block specific outputs or actions. Every major commercial AI has guardrails: refusals on certain content types, output filters, usage policies. Enterprise products layer additional guardrails on top. Guardrails are not always visible, not always documented, and not infallible. A tool that “will never include PHI in its output” is expressing a guardrail, not a technical impossibility.
Infrastructure Terms
API (Application Programming Interface). The drive-thru window between your AI and another app’s data. Your AI does not log into Epic. It sends requests to Epic’s API, which returns structured data. Every integration between an AI tool and a clinical system runs through an API. The API defines exactly what is available and what is not. “The AI can access your notes” means the EHR vendor opened a specific window. It does not mean the AI has access to everything.
API key. The credential that proves your AI is allowed at the window. A long random string that authenticates requests. If an API key is exposed, anyone who has it can make requests billed to your account. Never paste an API key into a document, a shared chat, or a screenshot. This is the first rule of every developer security guide, and clinicians building AI tools violate it regularly.
Markdown. Plain text that formats itself. Asterisks become bold. Pound signs become headers. Hyphens become bullet points. Most AI tools output markdown. If you paste AI output into a plain-text field and see asterisks everywhere, that is why. Obsidian, Notion, and most documentation tools render markdown natively. Word and the EHR do not.
JSON (JavaScript Object Notation). The note card format software uses to pass data between systems. Structured, readable by humans if you know what you’re looking at, and nearly universal as the data format for API responses. When your AI tool connects to a lab system and pulls results, the results arrive as JSON. You will not write JSON manually, but you will see it when debugging integrations or reading API documentation.
CLI / terminal / bash. Typing commands directly to the computer instead of clicking. The terminal is the text interface to your operating system. Bash is the language those commands are written in. Claude Code runs in a CLI. Setup instructions for AI tools often include CLI steps. If you see a block of text with a dollar sign at the start, that is a bash command you are meant to type into a terminal. The dollar sign is not part of the command.
curl. A CLI command that sends a request to an API and shows you what comes back. You will see curl in almost every API quickstart guide. It is the simplest way to test whether an API connection works. curl https://api.example.com/endpoint says: go to that address and show me what it returns. If you are working with a developer on an AI integration and they ask you to run a curl command, this is what they mean.
Webhook. An app that taps you on the shoulder the moment something happens, rather than waiting for you to ask. A scheduled appointment triggers a webhook that tells your AI to draft a pre-visit summary. A lab result comes in and triggers a webhook that flags it for review. Webhooks are how real-time AI workflows are built. Pull means you ask. Push means it tells you automatically. Webhooks are push.
Model version. The frozen snapshot of a model you are using. GPT-4o and GPT-4o-mini are different models. Claude 3.5 Sonnet and Claude 3 Opus are different models. A vendor who says “we use AI” without specifying the model version is telling you nothing about capability, cost, or consistency. Model versions matter because they change, and when a vendor updates the underlying model, your outputs may change without warning.
Latency. The lag between send and response. A few seconds of latency is irrelevant for drafting a discharge summary. It is material for real-time ambient scribing during a patient encounter. When evaluating clinical AI tools, latency is a practical specification, not a technical detail.
Rate limit. A cap on how many requests you can make per minute or per day. Hit the limit and requests fail until the window resets. You will see this as a 429 error. Rate limits exist because AI inference is expensive and providers need to manage load. Enterprise contracts typically include higher rate limits. If a clinical tool goes down at peak hours, a rate limit is one of the first things to check.
Terms That Are Not What You Think
Memory. “It remembers me.” It does not, by default. Memory is a feature layered on top of a model, not built in. Every new session starts with an empty context window unless memory has been explicitly configured. Some tools offer memory features that persist information across sessions. These are implemented by injecting stored summaries into the context window at the start of each conversation. They are useful and imperfect.
Training. “It learned from my chats.” Consumer AI products do not train on your inputs by default, and enterprise products typically contractually prohibit it. Check the privacy policy. “Training data” refers to the massive dataset used to build the model before you ever typed a word. Your conversations are not improving the model in real time. They may be logged for safety review, depending on the product and your agreement.
Intelligence. “It understands.” It predicts. Very sophisticated prediction, over an enormous training set, produces outputs that look indistinguishable from understanding in many contexts. They are not the same thing. The model has no goals, no comprehension, no awareness of whether its output is correct. It has learned which tokens tend to follow which other tokens, at extraordinary scale. That is the whole engine.
Confidence. “It sounds certain, so it probably is.” Confidence carries zero information about accuracy in an LLM. The most hallucinated outputs are often the most fluent and assertive. The model does not have an internal accuracy meter it consults before responding. Hedging language like “I believe” or “approximately” is a trained behavior, not a signal of calibration. Treat every output as unverified until you have checked it. See Judging the Output.
Cross-references: terms marked See Dx point to the spread that covers the concept in full clinical depth.